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Tools
| Tools | Description |
|---|---|
| Advanced Search | Advanced search of genes by name, function, location, Interpro domain, GO term or EC number... |
| Chromosome Viewer | Chromosome Viewer provides for each chromosome an overview of the density of genomic features |
| Gene Expression | Gene Expression provides gene expression values predicted from RNASeq (RPKM) for different tissues |
| Gene Families | Gene families are manually annotated and then analyzed phylogenetically in order to elucidate orthologous and paralogous relationships. This tool was provided by GreenPhylDB tools. |
| Metabolic Pathway | Metabolic pathway (Pathway Tools Software) manages predicted genes of Coffee recognized to be involved in specific metabolic pathways |
| Primer Blaster | Primer Blaster was designed to test the specificity of any primer pairs on the coffea genome. |
| Primer Designer | Primer Designer designs PCR primers amplifying a given chromosome location |
| Query Builder | Query Builder (Biomart) enables to customize your query of genomic features |
| Syntenic Dotplot | |
| SNPs |